QIIME 2™ is a next-generation microbiome bioinformatics platform that is extensible, free, open source, and community developed.

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Automatically track your analyses with decentralized data provenance — no more guesswork on what commands were run!

Interactively explore your data with beautiful visualizations that provide new perspectives.

Easily share results with your team, even those members without QIIME 2 installed.

Plugin-based system — your favorite microbiome methods all in one place.


Choose the interface that fits your needs

q2cli the command line interface

Artifact API the data scientist's interface

q2studio the graphical user interface